Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX1558328

SRA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

53/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2500 WGS of Hordeum vulgare (barley) provides ~18.2 Gb from ~60 million reads with high quality (97% Q20, 93% Q30), enabling cereal-crop genome analysis and variant discovery. The dataset supports crop genomics and breeding research. Researchers seeking plant genomics or grain-crop data will find this relevant.

Data type / assay
WGS
Organism
Hordeum vulgare
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 18287061300 reported
total reads 60956871 reported
n content pct 0.002 measured
pct q20 bases 97 measured
pct q30 bases 93 measured
gc content pct 44.6 measured
mean read length 150 measured
mean base quality 35.4 measured
adapter content pct 29.68 measured
duplication rate pct 41.48 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 53/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93 measured ×1 100%
duplication rate pct 41.48 measured ×0.5 0%
adapter content pct 29.68 measured ×0.4 0%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0