Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX155987

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

73/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Drosophila melanogaster WGS via Illumina Genome Analyzer IIx with very deep coverage (104.8×) from 70M reads, but moderate base quality (87.6% Q20, 81.4% Q30) may complicate variant calling. Excessive depth partially offsets quality limitations, enabling sensitive SNP discovery and large-scale population genomics in flies. High coverage compensates for quality, making this suitable for fly variant surveys despite read-quality constraints.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 14673883250 reported
total reads 69961745 reported
mean coverage 104.8 extrapolated
n content pct 0.344 measured
pct q20 bases 87.6 measured
pct q30 bases 81.4 measured
gc content pct 37.6 measured
mean read length 107.1 measured
mean base quality 32.7 measured
adapter content pct 0.02 measured
duplication rate pct 34.55 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 73/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 104.8 extrapolated ×1.2 100%
pct q30 bases 81.4 measured ×1 57%
duplication rate pct 34.55 measured ×0.5 17%
adapter content pct 0.02 measured ×0.4 100%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0