SRX156023

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Drosophila melanogaster WGS via Illumina Genome Analyzer IIx with 78.6× coverage from 47.6M short reads; base quality acceptable (84.7% Q20). Supports SNP/indel discovery and assembly for fly genetic mapping, though moderate quality at extremes may require filtering. Suitable for standard WGS applications in Diptera.

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 11007329310 reported

total reads 47648589 reported

mean coverage 78.6 extrapolated

n content pct 1.458 measured

pct q20 bases 84.7 measured

pct q30 bases 79.2 measured

gc content pct 37.6 measured

mean read length 117.6 measured

mean base quality 31.8 measured

adapter content pct 0 measured

duplication rate pct 29.07 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 78.6 extrapolated ×1.2 100%

pct q30 bases 79.2 measured ×1 46%

duplication rate pct 29.07 measured ×0.5 34%

adapter content pct 0 measured ×0.4 100%

QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0