Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRX156028

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

High-coverage whole-genome sequencing of Drosophila melanogaster on Illumina HiSeq 2000 with 61× depth and strong base quality (95.4% Q20, 89.8% Q30) enables reliable detection of single-nucleotide variants and small indels across the genome. This dataset is well-powered for population genetics, structural variant screening, and comprehensive variant annotation in this established model organism.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 8538663422 reported
total reads 42270611 reported
mean coverage 61 extrapolated
n content pct 0.021 measured
pct q20 bases 95.4 measured
pct q30 bases 89.8 measured
gc content pct 43.5 measured
mean read length 101 measured
mean base quality 35.1 measured
adapter content pct 0.03 measured
duplication rate pct 16.1 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 61 extrapolated ×1.2 100%
pct q30 bases 89.8 measured ×1 99%
duplication rate pct 16.1 measured ×0.5 75%
adapter content pct 0.03 measured ×0.4 100%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0