SRX156029

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

79/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9814496500 reported

total reads 39257986 reported

mean coverage 70.1 extrapolated

n content pct 0.006 measured

pct q20 bases 93 measured

pct q30 bases 86.5 measured

gc content pct 36.5 measured

mean read length 125 measured

mean base quality 34.6 measured

adapter content pct 0.02 measured

duplication rate pct 37.9 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 79/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 70.1 extrapolated ×1.2 100%

pct q30 bases 86.5 measured ×1 83%

duplication rate pct 37.9 measured ×0.5 7%

adapter content pct 0.02 measured ×0.4 100%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0