SRX156033

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Drosophila melanogaster WGS via Illumina HiSeq 2000 with balanced coverage (64.5×) and good quality (95% Q20, 89.4% Q30) from 44.7M reads. Supports confident SNP/indel detection and sequence assembly for this model organism. Reliable short-read WGS dataset for standard Drosophila genetic studies and reference-genome improvement projects.

Data type / assay

WGS

Organism

Drosophila melanogaster

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9030872580 reported

total reads 44707290 reported

mean coverage 64.5 extrapolated

n content pct 0.021 measured

pct q20 bases 95 measured

pct q30 bases 89.4 measured

gc content pct 43.4 measured

mean read length 101 measured

mean base quality 35 measured

adapter content pct 0.04 measured

duplication rate pct 18.82 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 64.5 extrapolated ×1.2 100%

pct q30 bases 89.4 measured ×1 97%

duplication rate pct 18.82 measured ×0.5 66%

adapter content pct 0.04 measured ×0.4 100%

QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0