SRX1571792

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Illumina MiSeq amplicon dataset from mouse-gut metagenome contains only ~435K reads (~131 Mb) with good quality (90.2% Q20, 80.3% Q30), providing shallow environmental amplicon profiling inadequate for comprehensive microbiome characterization. The minimal depth severely limits rare-taxon detection and community resolution. Researchers should treat this as preliminary microbiome survey data.

Data type / assay

amplicon

Organism

mouse gut metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 131166168 reported

total reads 435768 reported

n content pct 0.002 measured

pct q20 bases 90.2 measured

pct q30 bases 80.3 measured

gc content pct 51.6 measured

mean read length 301 measured

mean base quality 33.4 measured

adapter content pct 0.01 measured

duplication rate pct 98 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.3 measured ×1 52%

adapter content pct 0.01 measured ×0.5 100%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0