Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX160149

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-Seq of Caenorhabditis elegans on Illumina HiSeq 2000 with 27 million reads and perfect quality (100% Q20 and Q30) delivers pristine transcriptome profiling in this premier nematode model organism. The high-fidelity dataset is ideal for developmental transcriptomics, gene-expression validation, and functional-genomics studies in C. elegans.

Data type / assay
bulk-RNA-seq
Organism
Caenorhabditis elegans
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1352195050 reported
total reads 27043901 reported
n content pct 0.005 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 48 measured
mean read length 50 measured
mean base quality 30 measured
adapter content pct 89.55 measured
duplication rate pct 24.95 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 89.55 measured ×0.4 0%
duplication rate pct 24.95 measured ×0.4 100%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0