Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX160518

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

51/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-Seq of Caenorhabditis elegans on HiSeq 2000 spans 10.1 Gb with 174 million reads, though showing elevated N-content (0.961%) and moderate Q30 (82.5%) that may reflect polyA-tail sequencing or library artifacts. The massive depth enables confident detection of even lowly-expressed genes in this foundational nematode model. Whole-organism transcriptomics and temporal/developmental expression studies in C. elegans can leverage the scale of this dataset despite minor quality variation.

Data type / assay
bulk-RNA-seq
Organism
Caenorhabditis elegans
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10132237964 reported
total reads 174693758 reported
n content pct 0.961 measured
pct q20 bases 88.7 measured
pct q30 bases 82.5 measured
gc content pct 47.8 measured
mean read length 58 measured
mean base quality 33.2 measured
adapter content pct 87.94 measured
duplication rate pct 65.99 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 51/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.5 measured ×1 63%
mean base quality 33.2 measured ×0.6 87%
adapter content pct 87.94 measured ×0.4 0%
duplication rate pct 65.99 measured ×0.4 20%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0