Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRX1624478

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This WGS of Paulinella chromatophora on Illumina MiSeq delivers 21.1 Gb and 36 million reads with good quality (89.6% Q20, 87.4% Q30), providing useful coverage for this unusual protist harboring a photosynthetic organelle of independent origin. The dataset supports exploration of the chromatophore's distinct genome and gene expression, relevant to understanding eukaryotic endosymbiosis. Single-celled-organism genomics and organellar-evolution studies will find value in this WGS of this atypical photosynthetic eukaryote.

Data type / assay
WGS
Organism
Paulinella chromatophora
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 21148545700 reported
total reads 36384809 reported
n content pct 0 measured
pct q20 bases 89.6 measured
pct q30 bases 87.4 measured
gc content pct 39.2 measured
mean read length 250 measured
mean base quality 34.5 measured
adapter content pct 10.29 measured
duplication rate pct 12.75 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.4 measured ×1 87%
duplication rate pct 12.75 measured ×0.5 85%
adapter content pct 10.29 measured ×0.4 34%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0