Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX1624577

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina MiSeq bulk RNA-seq of Paulinella chromatophora (photosynthetic protist) generates ~16 million reads (~4.8 Gb) with high quality (94.5% Q20, 93.2% Q30), enabling transcriptome analysis of this unique single-celled eukaryote. The dataset supports protist biology research. Researchers seeking protist transcriptomics will find this useful.

Data type / assay
bulk-RNA-seq
Organism
Paulinella chromatophora
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4877344500 reported
total reads 16257815 reported
n content pct 0 measured
pct q20 bases 94.5 measured
pct q30 bases 93.2 measured
gc content pct 51 measured
mean read length 150 measured
mean base quality 36.1 measured
adapter content pct 28.26 measured
duplication rate pct 13.64 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.2 measured ×1 100%
mean base quality 36.1 measured ×0.6 100%
adapter content pct 28.26 measured ×0.4 0%
duplication rate pct 13.64 measured ×0.4 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0