Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRX1675529

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human WGS on HiSeq 2500 spans 82.7 Gb with 620 million reads at high 26.7× extrapolated coverage but elevated N-content (0.534%), providing sufficient depth for confident variant calling and structural-variant discovery despite minor quality reservations. The high coverage depth supports clinical-grade genotyping and de novo mutation detection. Human medical genomics and rare-disease studies can use this well-covered WGS for comprehensive variant annotation.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 82667488000 reported
total reads 619696198 reported
mean coverage 26.7 extrapolated
n content pct 0.534 measured
pct q20 bases 89.6 measured
pct q30 bases 83.7 measured
gc content pct 50.1 measured
mean read length 100 measured
mean base quality 34.5 measured
adapter content pct 8.58 measured
duplication rate pct 8.03 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 26.7 extrapolated ×1.2 85%
pct q30 bases 83.7 measured ×1 69%
duplication rate pct 8.03 measured ×0.5 100%
adapter content pct 8.58 measured ×0.4 46%
QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0