SRX1675530

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Illumina HiSeq 2500 WGS of Homo sapiens provides ~90.5 Gb from ~514 million reads at 29.2× coverage with high quality (96.9% Q20, 90% Q30), enabling comprehensive human genome variant discovery. The large dataset supports population genomics and medical-genomics applications. Researchers seeking human WGS will find this valuable.

Data type / assay

WGS

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 90563851664 reported

total reads 514567339 reported

mean coverage 29.2 extrapolated

n content pct 0.003 measured

pct q20 bases 96.9 measured

pct q30 bases 90 measured

gc content pct 48.8 measured

mean read length 88 measured

mean base quality 35.6 measured

adapter content pct 8.04 measured

duplication rate pct 26.87 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 29.2 extrapolated ×1.2 96%

pct q30 bases 90 measured ×1 100%

duplication rate pct 26.87 measured ×0.5 41%

adapter content pct 8.04 measured ×0.4 50%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0