Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRX1683594

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 1500 WGS of Arabidopsis thaliana provides ~12.9 Gb from ~21 million reads at exceptional 95.8× coverage with moderate quality (85.2% Q20, 72.5% Q30), enabling ultra-deep plant-genome variant analysis and structural-variant calling. The extreme coverage of this model organism supports reference-genome and systems-genomics applications despite moderate quality. Researchers seeking high-coverage plant genomics will find this highly valuable.

Data type / assay
WGS
Organism
Arabidopsis thaliana
Instrument
Illumina HiSeq 1500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 12936266400 reported
total reads 21560444 reported
mean coverage 95.8 extrapolated
n content pct 0.761 measured
pct q20 bases 85.2 measured
pct q30 bases 72.5 measured
gc content pct 36.7 measured
mean read length 300 measured
mean base quality 31.4 measured
adapter content pct 0.06 measured
duplication rate pct 4.66 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 95.8 extrapolated ×1.2 100%
pct q30 bases 72.5 measured ×1 13%
duplication rate pct 4.66 measured ×0.5 100%
adapter content pct 0.06 measured ×0.4 100%
QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0