Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX1726840

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human WGS on HiSeq 2500 covers 24.2 Gb with 48.8 million reads at ~7.8× extrapolated depth and good quality (96% Q20, 93.6% Q30), continuing the low-coverage human resequencing strategy across multiple samples. The dataset fits population-genomic designs requiring many individuals at shallow depth. Human population genetics and 1000 Genomes-scale studies can aggregate this and similar shallow-coverage samples.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 24237436511 reported
total reads 48820768 reported
mean coverage 7.8 extrapolated
n content pct 0.012 measured
pct q20 bases 96 measured
pct q30 bases 93.6 measured
gc content pct 40.6 measured
mean read length 248.4 measured
mean base quality 37.4 measured
adapter content pct 0.03 measured
duplication rate pct 0.27 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 7.8 extrapolated ×1.2 0%
pct q30 bases 93.6 measured ×1 100%
duplication rate pct 0.27 measured ×0.5 100%
adapter content pct 0.03 measured ×0.4 100%
QC cost 57 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0