Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX173254

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina Genome Analyzer IIx bulk RNA-seq of Prunus persica (peach) generates ~21 million reads (~3 Gb) with moderate quality (88.2% Q20, 60.6% Q30), enabling basic plant-transcriptome profiling from older-generation sequencing. The moderate quality requires careful transcript assembly and validation. Researchers seeking plant transcriptomics should accept quality limitations.

Data type / assay
bulk-RNA-seq
Organism
Prunus persica
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3094788864 reported
total reads 21197184 reported
n content pct 0.074 measured
pct q20 bases 88.2 measured
pct q30 bases 60.6 measured
gc content pct 46.7 measured
mean read length 71 measured
mean base quality 27.8 measured
adapter content pct 0.46 measured
duplication rate pct 12.85 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 60.6 measured ×1 0%
mean base quality 27.8 measured ×0.6 0%
adapter content pct 0.46 measured ×0.4 100%
duplication rate pct 12.85 measured ×0.4 100%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0