SRX1900402

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-Seq of Mus musculus using Illumina HiSeq 2000 with 64 million reads and exceptional quality (98.5% Q20, 95.6% Q30) delivers comprehensive transcriptome coverage in this model mammal. The large, high-quality dataset is well-powered for gene-expression profiling, developmental studies, and functional genomics of mouse tissues and cell types.

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3203795600 reported

total reads 64075912 reported

n content pct 0.002 measured

pct q20 bases 98.5 measured

pct q30 bases 95.6 measured

gc content pct 51.8 measured

mean read length 50 measured

mean base quality 37.4 measured

adapter content pct 0 measured

duplication rate pct 40.39 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%

mean base quality 37.4 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 40.39 measured ×0.4 77%

QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0