Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX191136

ENA first seen 2014

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This massive Triticum aestivum (wheat) RNA-Seq on Illumina Genome Analyzer spans 147 Gb across 21 files with 703 million reads and excellent quality (96.6% Q20, 93.4% Q30), representing one of the deepest plant transcriptome datasets for this staple crop. The extraordinary depth enables comprehensive isoform detection, allele-specific expression analysis, and rare-transcript discovery. Crop genomics and wheat-improvement studies can leverage this unusually deep short-read RNA-seq to understand polyploidy-related gene expression and developmental gene-regulation networks.

Data type / assay
bulk-RNA-seq
Organism
Triticum aestivum
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
21 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 147188047949 reported
total reads 702668676 reported
n content pct 0.048 measured
pct q20 bases 96.6 measured
pct q30 bases 93.4 measured
gc content pct 51 measured
mean read length 120 measured
mean base quality 37 measured
adapter content pct 18.82 measured
duplication rate pct 31.38 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.4 measured ×1 100%
mean base quality 37 measured ×0.6 100%
adapter content pct 18.82 measured ×0.4 7%
duplication rate pct 31.38 measured ×0.4 97%
QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0