Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX193575

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Felis catus (domestic cat) bulk RNA-Seq on Illumina Genome Analyzer spans 3.4 Gb with 68 million reads and good quality (90.2% Q20, 84.6% Q30), providing transcriptome-scale data for this important pet and model carnivore. The dataset enables gene-expression studies related to feline development, behavior, and disease susceptibility. Carnivore and companion-animal genomics researchers can use this cat RNA-seq to understand expression of traits like sensory perception and domestication-related genes.

Data type / assay
bulk-RNA-seq
Organism
Felis catus
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3408924200 reported
total reads 68178484 reported
n content pct 0.005 measured
pct q20 bases 90.2 measured
pct q30 bases 84.6 measured
gc content pct 49.7 measured
mean read length 50 measured
mean base quality 33.8 measured
adapter content pct 0.16 measured
duplication rate pct 8.1 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.6 measured ×1 73%
mean base quality 33.8 measured ×0.6 97%
adapter content pct 0.16 measured ×0.4 100%
duplication rate pct 8.1 measured ×0.4 100%
QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0