SRX1970162

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Illumina HiSeq 2000 WGS of Plasmopara viticola (oomycete plant pathogen) provides ~4.5 Gb from ~22 million reads with good quality (96.9% Q20, 91.2% Q30), enabling pathogen-genome analysis for plant-disease research. The dataset supports plant-pathology and resistance-breeding studies. Researchers seeking fungal/oomycete genomics will find this useful.

Data type / assay

WGS

Organism

Plasmopara viticola

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4521048800 reported

total reads 22605244 reported

n content pct 0.004 measured

pct q20 bases 96.9 measured

pct q30 bases 91.2 measured

gc content pct 44.8 measured

mean read length 100 measured

mean base quality 35.5 measured

adapter content pct 0.01 measured

duplication rate pct 6.23 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.2 measured ×1 100%

duplication rate pct 6.23 measured ×0.5 100%

adapter content pct 0.01 measured ×0.4 100%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0