Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX206834

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

60/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This WGS of Solenopsis invicta (red imported fire ant) on HiSeq 1000 spans 34.3 Gb with 171 million reads and good quality (85.6% Q20, 76.2% Q30), providing substantial coverage for this invasive but genomically interesting ant species. The dataset enables studies of chemical-defense genes, reproductive polymorphism, and colony-organization genetics. Insect genomics and invasion-ecology studies can use this fire-ant WGS to understand the genetic basis of invasiveness.

Data type / assay
WGS
Organism
Solenopsis invicta
Instrument
Illumina HiSeq 1000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 34320981800 reported
total reads 171604909 reported
n content pct 0.001 measured
pct q20 bases 85.6 measured
pct q30 bases 76.2 measured
gc content pct 41.1 measured
mean read length 100 measured
mean base quality 30.2 measured
adapter content pct 0.08 measured
duplication rate pct 12.36 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 60/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 76.2 measured ×1 31%
duplication rate pct 12.36 measured ×0.5 86%
adapter content pct 0.08 measured ×0.4 100%
QC cost 53 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0