Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRX208159

SRA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This WGS of Streptomyces sp. PAMC 26508 on PacBio RS delivers 187.8 Mb across only 133k long reads with perfect quality (100% Q20 and Q30), demonstrating the PacBio platform's strength in generating continuous reads spanning repetitive regions common in high-GC Streptomyces genomes. The longer reads resolve complex actinomycete architecture better than short-read technology. Antibiotic-producer genomics can use this long-read WGS for complete genome assembly.

Data type / assay
WGS
Organism
Streptomyces sp. PAMC 26508
Instrument
PacBio RS
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 187804165 reported
total reads 132906 reported
n content pct 0 measured
pct q20 bases 100 measured
pct q30 bases 100 measured
gc content pct 69.1 measured
mean read length 1408.5 measured
mean base quality 40 measured
adapter content pct 0 measured
duplication rate pct 2.68 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%
duplication rate pct 2.68 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0