Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX217718

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Panagrellus redivivus miRNA-Seq on Illumina Genome Analyzer IIx covers 918 Mb with 24.2 million reads and excellent quality (98.7% Q20, 95.2% Q30), providing small-RNA profiling for this free-living nematode. The dataset enables miRNA-focused studies of development and stress responses in a C. elegans relative. Nematode molecular biology and small-RNA regulation studies can use this P. redivivus dataset to compare miRNA landscapes across Caenorhabditis and related lineages.

Data type / assay
bulk-RNA-seq
Organism
Panagrellus redivivus
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 918149996 reported
total reads 24161842 reported
n content pct 0.009 measured
pct q20 bases 98.7 measured
pct q30 bases 95.2 measured
gc content pct 42 measured
mean read length 38 measured
mean base quality 37.6 measured
adapter content pct 0 measured
duplication rate pct 97.53 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.2 measured ×1 100%
mean base quality 37.6 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 97.53 measured ×0.4 0%
QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0