SRX2433645

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This PacBio RS II FL-cDNA (full-length cDNA) dataset from Camellia sinensis (tea) contains only 737 reads (~1.1 Mb) with perfect quality scores (100% Q20/Q30), representing an extremely shallow long-read transcriptome sample. The trivial depth makes this unsuitable for comprehensive isoform discovery or expression analysis. Researchers should treat this as a pilot or validation dataset only.

Data type / assay

bulk-RNA-seq

Organism

Camellia sinensis

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1175682 reported

total reads 737 reported

n content pct 0 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 43.3 measured

mean read length 1595.2 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 6.51 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 100 measured ×1 100%

mean base quality 30 measured ×0.6 33%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 6.51 measured ×0.4 100%

QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0