Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRX2436594

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 4000 bulk RNA-seq of Xiphophorus birchmanni (fish) generates ~377 million reads (~38.1 Gb) with exceptional quality (99.9% Q20/Q30), enabling comprehensive transcriptome profiling of this evolutionary-model organism. The massive dataset supports systems biology and evolutionary genomics. Researchers seeking fish transcriptomics or non-mammalian transcriptome data will find this highly valuable.

Data type / assay
bulk-RNA-seq
Organism
Xiphophorus birchmanni
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 38125990454 reported
total reads 377485054 reported
n content pct 0.029 measured
pct q20 bases 99.9 measured
pct q30 bases 99.9 measured
gc content pct 50.1 measured
mean read length 101 measured
mean base quality 30 measured
adapter content pct 0.79 measured
duplication rate pct 31.72 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.9 measured ×1 100%
mean base quality 30 measured ×0.6 33%
adapter content pct 0.79 measured ×0.4 100%
duplication rate pct 31.72 measured ×0.4 96%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0