Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

SRX247626

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina Genome Analyzer IIx WGS of Homo sapiens provides only ~843 Mb from ~23 million reads at minimal 0.3× coverage with good quality (98.6% Q20, 90.5% Q30), representing exome or ultra-shallow WGS. The trivial depth severely limits whole-genome variant detection. Researchers should treat this as targeted sequencing rather than WGS.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina Genome Analyzer IIx
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 843672600 reported
total reads 23435350 reported
mean coverage 0.3 extrapolated
n content pct 0.008 measured
pct q20 bases 98.6 measured
pct q30 bases 90.5 measured
gc content pct 39.8 measured
mean read length 36 measured
mean base quality 34.8 measured
adapter content pct 0.29 measured
duplication rate pct 2.98 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.3 extrapolated ×1.2 0%
pct q30 bases 90.5 measured ×1 100%
duplication rate pct 2.98 measured ×0.5 100%
adapter content pct 0.29 measured ×0.4 100%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0