Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRX2511757

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2000 WGS of Escherichia coli provides ~110 Mb from ~365K reads at 24× coverage with good quality (92.4% Q20, 91% Q30), enabling bacterial-genome variant analysis. The shallow volume is adequate for small bacterial genomes. Researchers seeking bacterial genomics will find this useful.

Data type / assay
WGS
Organism
Escherichia coli
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 110189683 reported
total reads 365767 reported
mean coverage 24 extrapolated
n content pct 0 measured
pct q20 bases 92.4 measured
pct q30 bases 91 measured
gc content pct 50.4 measured
mean read length 151 measured
mean base quality 35.6 measured
adapter content pct 27.21 measured
duplication rate pct 0.22 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 24 extrapolated ×1.2 73%
pct q30 bases 91 measured ×1 100%
duplication rate pct 0.22 measured ×0.5 100%
adapter content pct 27.21 measured ×0.4 0%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0