Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX2612067

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Zea mays (corn) bulk RNA-Seq on Illumina Genome Analyzer covers 598 Mb with 11.9 million reads and excellent quality (97.6% Q20, 95.4% Q30), providing a clean but modest-depth transcriptome sample for this major crop. The dataset suits focused studies of specific gene families or developmental stages rather than comprehensive expression atlases. Maize genomics and crop research can use this high-quality RNA-seq for targeted expression validation.

Data type / assay
bulk-RNA-seq
Organism
Zea mays
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 597783700 reported
total reads 11955674 reported
n content pct 0.002 measured
pct q20 bases 97.6 measured
pct q30 bases 95.4 measured
gc content pct 52.7 measured
mean read length 50 measured
mean base quality 37.6 measured
adapter content pct 0.39 measured
duplication rate pct 62.77 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.4 measured ×1 100%
mean base quality 37.6 measured ×0.6 100%
adapter content pct 0.39 measured ×0.4 100%
duplication rate pct 62.77 measured ×0.4 27%
QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0