Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX2612071

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Zea mays bulk RNA-seq via Illumina Genome Analyzer yielding 19.2M reads at excellent quality (99.2% Q20, 98.3% Q30); enables transcriptome mapping and gene expression quantification across maize tissues. Depth is limited (960M total bases) for deep expression profiling, but sufficient for discovering expressed loci. Suitable for maize developmental transcriptomics and functional annotation of coding sequences.

Data type / assay
bulk-RNA-seq
Organism
Zea mays
Instrument
Illumina Genome Analyzer
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 960257000 reported
total reads 19205140 reported
n content pct 0.003 measured
pct q20 bases 99.2 measured
pct q30 bases 98.3 measured
gc content pct 52.1 measured
mean read length 50 measured
mean base quality 38.8 measured
adapter content pct 0.66 measured
duplication rate pct 82.13 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.3 measured ×1 100%
mean base quality 38.8 measured ×0.6 100%
adapter content pct 0.66 measured ×0.4 100%
duplication rate pct 82.13 measured ×0.4 0%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0