SRX2632043

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Illumina HiSeq 2500 bulk RNA-seq of Oncorhynchus kisutch (coho salmon) generates ~68 million reads (~17.1 Gb) with high quality (97.3% Q20, 94.5% Q30), enabling comprehensive transcriptome profiling of this economically important aquaculture species. The dataset supports fish-biology and aquaculture research. Researchers seeking fish transcriptomics will find this valuable.

Data type / assay

bulk-RNA-seq

Organism

Oncorhynchus kisutch

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 17118034750 reported

total reads 68472139 reported

n content pct 0 measured

pct q20 bases 97.3 measured

pct q30 bases 94.5 measured

gc content pct 53.3 measured

mean read length 125 measured

mean base quality 36.4 measured

adapter content pct 6.75 measured

duplication rate pct 57.85 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.5 measured ×1 100%

mean base quality 36.4 measured ×0.6 100%

adapter content pct 6.75 measured ×0.4 74%

duplication rate pct 57.85 measured ×0.4 38%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0