Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX2632044

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Illumina HiSeq 2500 bulk RNA-seq of Oncorhynchus kisutch generates ~148 million reads (~37.2 Gb) with good quality (94.3% Q20, 88.7% Q30), enabling large-scale transcriptome characterization of coho salmon. The extensive dataset supports detailed fish-biology and aquaculture genomics. Researchers seeking comprehensive fish transcriptomics will find this highly valuable.

Data type / assay
bulk-RNA-seq
Organism
Oncorhynchus kisutch
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 37236736500 reported
total reads 148946946 reported
n content pct 0.001 measured
pct q20 bases 94.3 measured
pct q30 bases 88.7 measured
gc content pct 50.4 measured
mean read length 125 measured
mean base quality 35.1 measured
adapter content pct 8.92 measured
duplication rate pct 41.89 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.7 measured ×1 94%
mean base quality 35.1 measured ×0.6 100%
adapter content pct 8.92 measured ×0.4 62%
duplication rate pct 41.89 measured ×0.4 74%
QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0