Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRX263969

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

64/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-Seq of Acinetobacter baumannii ATCC 17978 on HiSeq 2000 covers 226 Mb with 2.3 million reads and moderate quality (89.2% Q20, 85.1% Q30), creating a small bacterial transcriptome snapshot. The modest read count limits dynamic-range and limits detection of lowly expressed genes. Microbial transcriptomics researchers should supplement this A. baumannii RNA-seq with deeper datasets for comprehensive pathway analysis.

Data type / assay
bulk-RNA-seq
Organism
Acinetobacter baumannii ATCC 17978
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 225888100 reported
total reads 2258881 reported
n content pct 0.062 measured
pct q20 bases 89.2 measured
pct q30 bases 85.1 measured
gc content pct 49.4 measured
mean read length 50 measured
mean base quality 33.8 measured
adapter content pct 10.85 measured
duplication rate pct 86.07 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 64/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.1 measured ×1 76%
mean base quality 33.8 measured ×0.6 97%
adapter content pct 10.85 measured ×0.4 51%
duplication rate pct 86.07 measured ×0.4 0%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0