SRX2697890

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ATAC-seq

Organism

Malus domestica

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3119934900 reported

total reads 10399783 reported

n content pct 0.001 measured

pct q20 bases 96.7 measured

pct q30 bases 92.2 measured

gc content pct 47.8 measured

mean read length 150 measured

mean base quality 38.3 measured

adapter content pct 95.19 measured

duplication rate pct 24.93 measured

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.2 measured ×1 100%

QC cost 1.3 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0