Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX2729308

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Drosophila melanogaster whole-genome long-read sequencing via PacBio RS II SMRT platform generates 3M long reads spanning 36.9B bases at extremely deep coverage (263.7×). Long reads enable full-length isoform assembly, repetitive region resolution, and structural variant detection impossible with short reads. Essential for de novo fly genome assembly and bridging complex genomic regions; transforms WGS capabilities from sequence mapping to complete genomic reconstruction.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
31 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 36924499277 reported
total reads 2996843 reported
mean coverage 263.7 extrapolated
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 41.5 measured
mean read length 11307.6 measured
mean base quality 10 measured
adapter content pct 0.02 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 263.7 extrapolated ×1.2 100%
pct q30 bases 0 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0.02 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0