Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRX2825805

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Schizosaccharomyces pombe bulk RNA-seq via Illumina HiSeq 2500 with excellent base quality (99% Q20, 98.2% Q30) from 49.9M reads across 2.5B bases. Enables precise transcriptome quantification, splice-variant detection, and gene-expression profiling in this model yeast. High-quality short-read RNA-seq is ideal for fission-yeast functional genomics, cell-cycle transcriptomics, and stress-response studies in a compact genome.

Data type / assay
bulk-RNA-seq
Organism
Schizosaccharomyces pombe
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2496514950 reported
total reads 49930299 reported
n content pct 0.007 measured
pct q20 bases 99 measured
pct q30 bases 98.2 measured
gc content pct 50.4 measured
mean read length 50 measured
mean base quality 38.5 measured
adapter content pct 1.07 measured
duplication rate pct 56.4 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.2 measured ×1 100%
mean base quality 38.5 measured ×0.6 100%
adapter content pct 1.07 measured ×0.4 100%
duplication rate pct 56.4 measured ×0.4 41%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0