Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX286417

ENA first seen 2013

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This WES (whole-exome sequencing) of Homo sapiens on Ion Torrent PGM spans 4.04 Gb with 26 million reads but shows lower quality (84.8% Q20, 55.5% Q30) characteristic of this semiconductor platform, targeting coding regions for medical-genetics studies. The targeted approach concentrates depth on disease-relevant exons despite platform-specific quality. Clinical genetics and rare-disease studies can use this exome WES for gene-discovery variants.

Data type / assay
WES
Organism
Homo sapiens
Instrument
Ion Torrent PGM
Platform
ION_TORRENT
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4041334204 reported
total reads 26007486 reported
n content pct 0 measured
pct q20 bases 84.8 measured
pct q30 bases 55.5 measured
gc content pct 54.9 measured
mean read length 155.1 measured
mean base quality 28.3 measured
adapter content pct 0 measured
duplication rate pct 0.07 measured
mean target coverage 65.2 extrapolated
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 65.2 extrapolated ×1.2 100%
pct q30 bases 55.5 measured ×1 0%
duplication rate pct 0.07 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 1 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0