Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX3223612

SRA

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Chicken bulk RNA-seq. Grade A with full measured evidence. Favorable duplication (37.37%, scoring 84/100) and consistently high quality metrics (Q30 94.4%, base quality 36.3) make this suitable for expression studies without major QC reservations.

Data type / assay
bulk-RNA-seq
Organism
Gallus gallus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4105717064 reported
total reads 40650664 reported
n content pct 0.008 measured
pct q20 bases 98.2 measured
pct q30 bases 94.4 measured
gc content pct 47.5 measured
mean read length 101 measured
mean base quality 36.3 measured
adapter content pct 0.01 measured
duplication rate pct 37.37 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.4 measured ×1 100%
mean base quality 36.3 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 37.37 measured ×0.4 84%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 91