Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX3223622

SRA

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk RNA-seq; premier (perfect 100/100, grade A). Moderate duplication (29.81%) and top-tier quality metrics (Q30 91.5%, base quality 35.5) make this exceptional. Highly suitable for reuse.

Data type / assay
bulk-RNA-seq
Organism
Gallus gallus
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4819416495 reported
total reads 47716995 reported
n content pct 0.035 measured
pct q20 bases 97.3 measured
pct q30 bases 91.5 measured
gc content pct 47 measured
mean read length 101 measured
mean base quality 35.5 measured
adapter content pct 0.06 measured
duplication rate pct 29.81 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.5 measured ×1 100%
mean base quality 35.5 measured ×0.6 100%
adapter content pct 0.06 measured ×0.4 100%
duplication rate pct 29.81 measured ×0.4 100%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 91