SRX3240741

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

viral metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 386980650 reported

total reads 642825 reported

n content pct 0.012 measured

pct q20 bases 91.1 measured

pct q30 bases 89.6 measured

gc content pct 30.3 measured

mean read length 301 measured

mean base quality 35.6 measured

adapter content pct 43.01 measured

duplication rate pct 16.97 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.6 measured ×1 98%

duplication rate pct 16.97 measured ×0.5 72%

adapter content pct 43.01 measured ×0.4 0%

QC cost 46 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0