Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX326764

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:opus

This is a deep whole-genome shotgun sequencing run of the Asian longhorned beetle (Anoplophora glabripennis) on Illumina HiSeq 2000, and on QC terms it is a strong, trustworthy dataset that earned its A (96/100) on a foundation of genuinely measured quality metrics. The grade is driven up by excellent base accuracy — 90.2% of bases at Q30 and a mean base quality of 35.5, with negligible adapter (0.34%) and N content (0.008%) — meaning reads should align and call variants reliably with little upfront cleaning. The one metric that pulled the score down is a duplication rate of 12.59% (scored 86/100), which is moderate rather than alarming but signals some PCR/optical redundancy you should mark-duplicates before variant calling so effective coverage isn't overstated. With ~42.4 Gb of 101 bp reads and the key quality, adapter, and duplication metrics all directly measured (evidence_strength=1), this reading is solid and not provisional, making the dataset suitable for reuse in assembly or resequencing work.

Data type / assay
WGS
Organism
Anoplophora glabripennis
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 42359356368 reported
total reads 209699784 reported
n content pct 0.008 measured
pct q20 bases 95.7 measured
pct q30 bases 90.2 measured
gc content pct 37.1 measured
mean read length 101 measured
mean base quality 35.5 measured
adapter content pct 0.34 measured
duplication rate pct 12.59 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.2 measured ×1 100%
duplication rate pct 12.59 measured ×0.5 86%
adapter content pct 0.34 measured ×0.4 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 84