Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX3379469

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

76/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Large-scale bulk RNA-Seq of Oncorhynchus tshawytscha (Chinook salmon) using Illumina HiSeq 4000 with 110.6 million reads and good quality (90.2% Q20, 78.5% Q30) enables comprehensive transcriptome profiling in this ecologically important salmonid. The dataset supports aquaculture genomics, conservational transcriptomics, and gene-expression analysis of migration-related traits in wild and hatchery populations.

Data type / assay
bulk-RNA-seq
Organism
Oncorhynchus tshawytscha
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 22127912600 reported
total reads 110639563 reported
n content pct 0.005 measured
pct q20 bases 90.2 measured
pct q30 bases 78.5 measured
gc content pct 49 measured
mean read length 100 measured
mean base quality 34.4 measured
adapter content pct 1.62 measured
duplication rate pct 16.88 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 76/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 78.5 measured ×1 43%
mean base quality 34.4 measured ×0.6 100%
adapter content pct 1.62 measured ×0.4 100%
duplication rate pct 16.88 measured ×0.4 100%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0