SRX3420380

ENA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

insufficient data to score

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained

Data type / assay

ATAC-seq

Organism

Malus domestica

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3628381800 reported

total reads 12094606 reported

n content pct 0.003 measured

pct q20 bases 95.5 measured

pct q30 bases 90.7 measured

gc content pct 46.2 measured

mean read length 150 measured

mean base quality 37.9 measured

adapter content pct 95.4 measured

duplication rate pct 42.94 measured

How this grade was computed

The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.7 measured ×1 100%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0