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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
2/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Silene latifolia
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
3419093888
reported
total reads
22824322
reported
n content pct
0.087
measured
pct q20 bases
68.7
measured
pct q30 bases
59.7
measured
gc content pct
48.5
measured
mean read length
93
measured
mean base quality
24.8
measured
adapter content pct
62.74
measured
duplication rate pct
69.71
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 2/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
59.7
measured
×1
0%
mean base quality
24.8
measured
×0.6
0%
adapter content pct
62.74
measured
×0.4
0%
duplication rate pct
69.71
measured
×0.4
12%
QC cost
20 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0