Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX3712536

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Mus musculus WGS on Illumina MiSeq spans 5.0 Gb with 10 million reads at very shallow 1.9× extrapolated coverage but good quality (95.4% Q20, 92.6% Q30), creating a low-depth mouse genome suitable for population studies rather than individual genotyping. The modest depth reflects economic resequencing strategy. Mouse genomics and QTL mapping can use this low-depth sample within population surveys.

Data type / assay
WGS
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5048106212 reported
total reads 10099225 reported
mean coverage 1.9 extrapolated
n content pct 0.003 measured
pct q20 bases 95.4 measured
pct q30 bases 92.6 measured
gc content pct 41 measured
mean read length 250 measured
mean base quality 37.3 measured
adapter content pct 0.88 measured
duplication rate pct 6.48 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 1.9 extrapolated ×1.2 0%
pct q30 bases 92.6 measured ×1 100%
duplication rate pct 6.48 measured ×0.5 100%
adapter content pct 0.88 measured ×0.4 100%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0