Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRX4119418

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human-gut-metagenome amplicon on Illumina MiSeq covers 81 Mb with 135k reads and excellent quality (94.2% Q20, 87.5% Q30), providing targeted bacterial-community composition for this mammalian microbiome. The dataset, though small, captures community membership at fine taxonomic resolution. Gut-microbiome and human-health studies can use this amplicon-seq to track dysbiosis or dietary changes.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 80895504 reported
total reads 134652 reported
n content pct 0.001 measured
pct q20 bases 94.2 measured
pct q30 bases 87.5 measured
gc content pct 50.2 measured
mean read length 300.8 measured
mean base quality 35 measured
adapter content pct 0 measured
duplication rate pct 92.22 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.5 measured ×1 88%
adapter content pct 0 measured ×0.5 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0