SRX498126

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Cimex lectularius bed bug WGS with excellent base quality (92.4% Q30, 36.1 mean) but elevated duplication (23.42%, scored 52/100)—Grade B. Useful for variant discovery and phylogenomics, though structural variants may reflect PCR artifacts.

Data type / assay

WGS

Organism

Cimex lectularius

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 40598810016 reported

total reads 200984208 reported

n content pct 0.024 measured

pct q20 bases 96.4 measured

pct q30 bases 92.4 measured

gc content pct 35.4 measured

mean read length 101 measured

mean base quality 36.1 measured

adapter content pct 0.43 measured

duplication rate pct 23.42 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.4 measured ×1 100%

duplication rate pct 23.42 measured ×0.5 52%

adapter content pct 0.43 measured ×0.4 100%

QC cost 49 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0