SRX5136411

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Bos taurus

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 66275725752 reported

total reads 219808923 reported

mean coverage 24.5 extrapolated

n content pct 0.015 measured

pct q20 bases 95.9 measured

pct q30 bases 89.2 measured

gc content pct 43.4 measured

mean read length 150 measured

mean base quality 37.5 measured

adapter content pct 0.88 measured

duplication rate pct 9.03 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 24.5 extrapolated ×1.2 75%

pct q30 bases 89.2 measured ×1 96%

duplication rate pct 9.03 measured ×0.5 97%

adapter content pct 0.88 measured ×0.4 100%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0