Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRX532381

SRA

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Yeast bulk-RNA-seq with very short reads (34bp) and extremely high PCR duplication (66.77%), limiting isoform-level discrimination and transcript abundance accuracy; short reads and duplication together reduce mapping confidence.

Data type / assay
bulk-RNA-seq
Organism
Saccharomyces cerevisiae BY4741
Instrument
Illumina MiSeq
Platform
ILLUMINA
N numbers (samples, groups)
4 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2177519596 reported
total reads 64044694 reported
n content pct 0.004 measured
pct q20 bases 98.2 measured
pct q30 bases 92.3 measured
gc content pct 45.5 measured
mean read length 34 measured
mean base quality 34.5 measured
adapter content pct 0.08 measured
duplication rate pct 66.77 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.3 measured ×1 100%
mean base quality 34.5 measured ×0.6 100%
adapter content pct 0.08 measured ×0.4 100%
duplication rate pct 66.77 measured ×0.4 18%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it mean score 60