SRX651558

ENA first seen 2015

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Strawberry WGS with marginal base quality (83.6% Q30 scored 68/100) and elevated N-content (0.319%)—Grade B borderline. Suitable for SNP discovery with stringent filtering but not recommended for low-coverage haploid applications.

Data type / assay

WGS

Organism

Fragaria x ananassa

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 20317500572 reported

total reads 100581686 reported

n content pct 0.319 measured

pct q20 bases 89.5 measured

pct q30 bases 83.6 measured

gc content pct 39.8 measured

mean read length 101 measured

mean base quality 33.3 measured

adapter content pct 0.28 measured

duplication rate pct 1.72 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.6 measured ×1 68%

duplication rate pct 1.72 measured ×0.5 100%

adapter content pct 0.28 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0