SRX6649376

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This amplicon-seq dataset from Solanum using NextSeq 500 generated ~110k reads with good quality (94% ≥Q20), enabling deep characterization of targeted genomic or functional regions in this plant genus through PCR-based enrichment.

Data type / assay

amplicon

Organism

Solanum

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 16485750 reported

total reads 109905 reported

n content pct 0 measured

pct q20 bases 94 measured

pct q30 bases 90.5 measured

gc content pct 40.8 measured

mean read length 150 measured

mean base quality 33.8 measured

adapter content pct 9.38 measured

duplication rate pct 67.26 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.5 measured ×1 100%

adapter content pct 9.38 measured ×0.5 40%

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0